Release notes

Version 0.4.9

0.4.0 2022-02-03

Feature

• Upgrade stSME, PSTS and CCI analysis methods.

• Add CCI analysis functions: load_lrs(), grid(), run(), adj_pvals(), run_lr_go(), lr_summary(), lr_diagnostics(), lr_n_spots(), lr_go(), lr_result_plot(), lr_plot(), cci_check(), ccinet_plot(), lr_chord_plot(), lr_cci_map(), cci_map(), lr_plot_interactive(), spatialcci_plot_interactive()

0.3.2 2021-03-29

Feature

• Add interactive plotting functions: gene_plot_interactive(), cluster_plot_interactive(), het_plot_interactive()

• Add basic unittest (will add more in the future).

• Add ‘contour’ parameter to use contour plot in gene_plot() and het_plot().

• Add convert_scanpy() to convert object from scanpy to stLearn.

Bug fixes

• Refactor gene_plot()

• Refactor cluster_plot()

• Refactor het_plot()

• Fixed issue with networkx object cannot write h5ad file.