stlearn.add.add_loupe_clusters

stlearn.add.add_loupe_clusters(adata: AnnData, loupe_path: Union[Path, str], key_add: str = 'multiplex', copy: bool = False) → Optional[AnnData][source]

Adding label transfered from Seurat

Parameters:

  • adata – Annotated data matrix.

  • annotation_path – Path of the output of label transfer result by Seurat

  • use_label – Choosing cluster type.

  • threshold – Quantile threshold of label

  • copy – Return a copy instead of writing to adata.

Returns:

  • Depending on copy, returns or updates adata with the following fields.

  • **[cluster method name]_anno** (adata.obs field) – The annotation of cluster results.