stlearn.pl.non_spatial_plot

stlearn.pl.non_spatial_plot(adata: AnnData, use_label: str = 'louvain') → Optional[AnnData]

A wrap function to plot all the non-spatial plot from scanpy.

This function will produce 3 plots: PAGA graph, cluster plot in PAGA space and DPT in PAGA space.

Parameters:

• adata – Annotated data matrix.

• use_label – Use label result of cluster method.

• dpi – Set dpi as the resolution for the plot.

Return type:

Nothing