stlearn.pl.trajectory.transition_markers_plot

stlearn.pl.trajectory.transition_markers_plot(adata: AnnData, trajectory: str, top_genes: int = 10, dpi: int = 150, output: str | None = None, name: str | None = None) → AnnData | None[source]

Plot transition marker.

Parameters:

  • adata – Annotated data matrix.

  • trajectory – Name of a clade/branch user wants to plot transition markers.

  • top_genes – Top genes users want to display in the plot.

  • dpi – The resolution of the plot.

  • output – The output folder of the plot.

  • name – The filename of the plot.

Return type:

Anndata