stlearn.spatial.trajectory.pseudotimespace_local

stlearn.spatial.trajectory.pseudotimespace_local(adata: AnnData, use_label: str = 'leiden', cluster=None, w: float | None = None) → AnnData | None[source]

Perform pseudo-time-space analysis with local level.

Parameters:

  • adata (AnnData) – Annotated data matrix.

  • use_label (str, default = "leiden") – Use label result of cluster method.

  • cluster – Cluster used to reconstruct intra regional spatial trajectory.

  • w – Weighting factor to balance between spatial data and gene expression

Return type:

Anndata