stlearn.tl.cci.load_lrs¶

stlearn.tl.cci.load_lrs(names: str | list | None = None, species: str = 'human') → ndarray[source]¶

Loads inputted LR database, & concatenates into consistent database set of pairs without duplicates. If None loads ‘connectomeDB2020_lit’.

Parameters:

names (list) – Databases to load, options: ‘connectomeDB2020_lit’ (literature verified), ‘connectomeDB2020_put’ (putative). If more than one specified, loads all & removes duplicates.
species (str) – Format of the LR genes, either ‘human’ or ‘mouse’.

Returns:

lrs – lr pairs from the database in format [‘L1_R1’, ‘LN_RN’]

Return type:

np.array