All modules for which code is available

• stlearn._datasets._datasets
• stlearn.adds.add_deconvolution
• stlearn.adds.add_image
• stlearn.adds.add_labels
• stlearn.adds.add_loupe_clusters
• stlearn.adds.add_lr
• stlearn.adds.add_mask
• stlearn.adds.add_positions
• stlearn.adds.annotation
• stlearn.adds.parsing
• stlearn.embedding.diffmap
• stlearn.embedding.fa
• stlearn.embedding.ica
• stlearn.embedding.pca
• stlearn.embedding.umap
• stlearn.image_preprocessing.feature_extractor
• stlearn.image_preprocessing.image_tiling
• stlearn.pl.cci_plot
• stlearn.pl.cluster_plot
• stlearn.pl.deconvolution_plot
• stlearn.pl.gene_plot
• stlearn.pl.mask_plot
• stlearn.pl.non_spatial_plot
• stlearn.pl.qc_plot
• stlearn.pl.subcluster_plot
• stlearn.pl.trajectory.de_transition_plot
• stlearn.pl.trajectory.local_plot
• stlearn.pl.trajectory.pseudotime_plot
• stlearn.pl.trajectory.transition_markers_plot
• stlearn.pl.trajectory.tree_plot
• stlearn.preprocessing.filter_genes
• stlearn.preprocessing.graph
• stlearn.preprocessing.log_scale
• stlearn.preprocessing.normalize
• stlearn.spatial.clustering.localization
• stlearn.spatial.morphology.adjust
• stlearn.spatial.sme.pseudo_spot
• stlearn.spatial.sme.sme_impute0
• stlearn.spatial.sme.sme_normalize
• stlearn.spatial.trajectory.compare_transitions
• stlearn.spatial.trajectory.detect_transition_markers
• stlearn.spatial.trajectory.pseudotime
• stlearn.spatial.trajectory.pseudotimespace
• stlearn.spatial.trajectory.set_root
• stlearn.tl.cci.analysis
• stlearn.tl.clustering.kmeans
• stlearn.tl.clustering.leiden
• stlearn.wrapper.convert_scanpy
• stlearn.wrapper.read